Stem-loop aof-MIR12159

Accession

MI0040536

Description

Asparagus officinalis aof-MIR12159 precursor miRNA

Sequence

cgguuuuugggccgauauggugauucauugguuggcguggagaggccugguacgaguuggaccugccuugacaucggaugcuuugauuggcuaguaaacauuuggccggguuaucuaauuUUCCGAGUGAAGAAUCGUUGCUacauagaacc
.((((((..(...(..(((((..((((((.......(((..(((((..(((.(......)))).)))))..)))((((......((((((((((.......)))))))....)))......))))))))))..)))))..)..)..))))))

Structure

c      ug gcc au     ga      gguuggcguggagaggccugguacgaguuggaccugccuugacau    ugcuuugauuggcuaguaaa 
 gguuuu  g   g  auggu  uucauu                                             cgga                    c
 ||||||  |   |  |||||  ||||||                                             ||||                    a
 ccaaga  c   C  UGCUA  AAGUGA                                             GCCU                    u
-      ua -aU GU     AG      ---------------------------------------------    Uuuaaucuauugggccgguu 

Annotation confidence Not enough data

Genome context

chr3: 65662303-65662454 [+]

Mature aof-miR12159

• Accession: MIMAT0049742
• Description: Asparagus officinalis aof-miR12159 mature miRNA
• Sequence: 121 - UUCCGAGUGAAGAAUCGUUGCU - 142
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279