Stem-loop aof-MIR12160

Accession

MI0040537

Description

Asparagus officinalis aof-MIR12160 precursor miRNA

Sequence

ccgggauggaUUUCCAGACAUCUUCGUCAAGCccuagaaaaaaauuuacaauucauauaagauauaagcgaaauagacauauuuauaaauuugaagauauaaauuucaaacaacauaaauuuuuauaaugguuaccuuuuucucuuuacagaaguguuagguucuacagaau
......((((...((.((((.((((((.(((....(((((((..........((......))..(((.((..(((((...((((((...(((((((.......)))))))....)))))).)))))..)).)))..)))))))))).)).)))))))).)).))))......

Structure

ccggga    UUU  A    U    -  C   Cccu       aauuuacaauucauauaagaua   g  aa     cau      -aaa       au 
      ugga   CC GACA CUUC GU AAG    agaaaaa                      uaa cg  auaga   auuuau    uuugaag  a
      ||||   || |||| |||| || |||    |||||||                      ||| ||  |||||   ||||||    |||||||  u
      aucu   gg uugu gaag ca uuc    ucuuuuu                      auu gu  uauuu   uaaaua    aaacuuu  a
uaagac    --u  a    -    a  u   ----       --------------------cc   g  aa     --u      caac       aa 

Annotation confidence Not enough data

Genome context

chr1: 30416724-30416895 [-]

Mature aof-miR12160

• Accession: MIMAT0049743
• Description: Asparagus officinalis aof-miR12160 mature miRNA
• Sequence: 11 - UUUCCAGACAUCUUCGUCAAGC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279