Stem-loop aof-MIR12161

Accession

MI0040538

Description

Asparagus officinalis aof-MIR12161 precursor miRNA

Sequence

ccuugacgggCGAGUUUUCACGUUUGGGCGAacuccaguauguaggcgaguuuuaacccuucguucgaacgggcggguucgcgaggugucgccuacuucuucgccuuuauguuuauccgccaaagggcuauggcgaggcucgccagcccuuggggauucgccuauucggguaggcucgcucgcucagggu
(((((((((((((((((...((..((((((((((((((...((.((((((((((...((...((((.....(((((((..((((((((.............))))))...))..)))))))...))))...)).)))))))))).))..)))))).))))))))..))...))))))))))).)))))).

Structure

-      -           UCA  UU        -      uau  a          aac  uuc    gaacg       uc  ---      ucgcc 
 ccuuga cgggCGAGUUU   CG  UGGGCGAa cuccag   gu ggcgaguuuu   cc   guuc     ggcgggu  gc   gaggug     u
 |||||| |||||||||||   ||  |||||||| ||||||   || ||||||||||   ||   ||||     |||||||  ||   ||||||     a
 gggacu gcucgcucgga   gc  auccgcuu gggguu   cg ccgcucggag   gg   cggg     ccgccua  ug   uuccgc     c
u      c           ugg  uu        a      -cc  a          --c  uau    --aaa       uu  uau      uucuu 

Annotation confidence Not enough data

Genome context

KV863778.1: 36744-36933 [-]

Mature aof-miR12161

• Accession: MIMAT0049744
• Description: Asparagus officinalis aof-miR12161 mature miRNA
• Sequence: 11 - CGAGUUUUCACGUUUGGGCGA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279