Stem-loop aof-MIR12163

Accession

MI0040540

Description

Asparagus officinalis aof-MIR12163 precursor miRNA

Sequence

caagcggauuAUUCCGCUCGUUUGACUCUAGcagccaacagagcauguggcugucagcaacuagagucaaacaagcagaaagaucugccugu
((.(((((((.(((.(((.((((((((((((((((((.((.....)))))))).......)))))))))))).))).))).))))))).)).

Structure

-  a       A   C   C            -------      a  g 
 ca gcggauu UUC GCU GUUUGACUCUAG       cagcca ca a
 || ||||||| ||| ||| ||||||||||||       |||||| || g
 gu cgucuag aag cga caaacugagauc       gucggu gu c
u  c       a   a   a            aacgacu      -  a 

Annotation confidence Not enough data

Genome context

chr10: 36879675-36879766 [-]

Mature aof-miR12163

• Accession: MIMAT0049746
• Description: Asparagus officinalis aof-miR12163 mature miRNA
• Sequence: 11 - AUUCCGCUCGUUUGACUCUAG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279