miRBase entry: aof-MIR12164

Stem-loop aof-MIR12164

Accession

MI0040543

Description

Asparagus officinalis aof-MIR12164 precursor miRNA

Sequence

aagggaccuguucguaagaguuguggguaugagacuuucggggaaguguuuuuagccuuuugaagaaacugcuuacuUCCCGAAACUCCGCAUGCCCACgguuuuuacgagcuccuuucucuuc
((((((...((((((((((((((((((((((.((.(((((((.(((((.....(((..(((....)))..))))))))))))))).))..))))))))))))))))))))))))))))......

Structure

------      ccu                      -a  c       g     uuuuu   cu   g 
      aaggga   guucguaagaguuguggguaug  ga uuucggg aagug     agc  uuu a
      ||||||   ||||||||||||||||||||||  || ||||||| |||||     |||  |||  
      uuuccu   cgagcauuuuuggCACCCGUAC  CU AAAGCCC Uucau     ucg  aaa a
cuucuc      ---                      GC  C       -     -----   uc   g

Annotation confidence Not enough data

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Genome context

chr1: 113527974-113528097 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR12164

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature aof-miR12164

Accession	MIMAT0049749
Description	Asparagus officinalis aof-miR12164 mature miRNA
Sequence	78 - UCCCGAAACUCCGCAUGCCCAC - 99
Evidence	experimental Illumina [1]

References

PubMed ID: 29093472
The asparagus genome sheds light on the origin and evolution of a young Y chromosome
Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
Nat Commun (2017) 8:1279