Stem-loop aof-MIR12165

Accession

MI0040544

Description

Asparagus officinalis aof-MIR12165 precursor miRNA

Sequence

gagugggucuUGCACUUGGUCGCUCAAUGACcaaacuacccuccagucuauguucccucuaaaaacccuucucguccagaaaaacauuggcuaacggguauuuuggucauugagugaccaaauugcaagacaucuua
(((...((((((((.((((((((((((((((((((.(((((...((((.(((((...(((.................)))..))))).))))...))))).))))))))))))))))))))..))))))))..))).

Structure

-   ugg        -C                    c     ucc    u     ccc   aaaaacc 
 gag   gucuUGCA  UUGGUCGCUCAAUGACcaaa uaccc   aguc auguu   ucu       c
 |||   ||||||||  |||||||||||||||||||| |||||   |||| |||||   |||       u
 uuc   cagaacgu  aaccagugaguuacugguuu auggg   ucgg uacaa   aga       u
a   -ua        ua                    u     caa    u     -aa   ccugcuc 

Annotation confidence Not enough data

Genome context

chr7: 24481840-24481976 [-]

Mature aof-miR12165

• Accession: MIMAT0049750
• Description: Asparagus officinalis aof-miR12165 mature miRNA
• Sequence: 11 - UGCACUUGGUCGCUCAAUGAC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279