Stem-loop aof-MIR12168

Accession

MI0040547

Description

Asparagus officinalis aof-MIR12168 precursor miRNA

Sequence

gcaauuucuuUUUGAUUAUUGGAUUGUUGCCUuucauuucuugaggcaccugaaccaaugauuuucuuugcagguuaccuaugucguuaaagggaucacgca
((((.........(((((((((...(.((((((.........)))))).)....)))))))))....)))).((((.(((.((....)).))))))).....

Structure

-------------------------------    uuucuuUUU         -AUU U      uca 
                               gcaa         GAUUAUUGG    G UGCCUu   u
                               ||||         |||||||||    | ||||||   u
                               cguu         uuaguaacc    c acggag   u
acgcacuagggaaauugcuguauccauugga    -----ucuu         aagu c      uuc 

Annotation confidence Not enough data

Genome context

KV863895.1: 78470-78571 [-]

Mature aof-miR12168

• Accession: MIMAT0049753
• Description: Asparagus officinalis aof-miR12168 mature miRNA
• Sequence: 11 - UUUGAUUAUUGGAUUGUUGCCU - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279