Stem-loop aof-MIR12169

Accession

MI0040548

Description

Asparagus officinalis aof-MIR12169 precursor miRNA

Sequence

cccuagcauauaccgaauaccuuauguugcuuuuguaauucuuuuaggguuuuacggagaggaauagauuguUAGGAGUUAUUGGAUUGGGUUuggguuggaa
..(((((....(((.(((.((...((((.(((((((((..(((...)))..)))).))))).))))((((......))))...))))).)))....)))))..

Structure

cc     auau   g   a  uuauguugcuuuuguaauucuuuuaggguuuuacggagaggaaua    gu 
  cuagc    acc aau cc                                             gauu  U
  |||||    ||| ||| ||                                             ||||   
  gguug    UGG UUA GG                                             UUGA  A
aa     gguU   G   -  ------------------------------------------UUA    GG 

Annotation confidence Low

Genome context

chr4: 18990563-18990665 [-]

Mature aof-miR12169

• Accession: MIMAT0049754
• Description: Asparagus officinalis aof-miR12169 mature miRNA
• Sequence: 73 - UAGGAGUUAUUGGAUUGGGUU - 93
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279