Stem-loop aof-MIR12170

Accession

MI0040549

Description

Asparagus officinalis aof-MIR12170 precursor miRNA

Sequence

cccaaacugaUAAGAACUCAUGAAUAAAUGCAaaaaaacacugucacaucauuaaucugucaaauauuugacuguuggcucacaacaugaccgcauugaacccacaaacauacuuuaagggucaaaauagguaaacugauacuuuagugggaaguugagaguucacccauagauacuugaaggaugaguuaguuauuuuguucuauuuuguucuuagagauuaau
......((..(((((((....(((((...((((((.(((((((((.(.(((...(((((((((....)))))(((((.....)))))..(((...((((.(((...............)))))))....)))..(((((....)))))(((....(((....))))))..))))...))).)))).)))..))).))))))..))))).))))))).))......

Structure

cccaaa  ga       UCAU     AAU      a   --   -   a a   uua    -------gucaaauauuugacuguuggcucacaacaug   -gca    a   acaaac 
      cu  UAAGAAC    GAAUA   GCAaaa aac  acu guc c uca   aucu                                      acc    uuga ccc      a
      ||  |||||||    |||||   |||||| |||  ||| ||| | |||   ||||                                      |||    |||| |||      u
      ga  auucuug    uuuau   uguuuu uug  uga uag g agu   uaga                                      ugg    aacu ggg      a
uaauua  -g       ---u     -cu      a   au   g   - a   uca    uacccacuugagaguugaagggugauuucauagucaaa   auaa    -   aauuuc 

Annotation confidence Not enough data

Genome context

chr3: 38480916-38481140 [-]

Mature aof-miR12170

• Accession: MIMAT0049755
• Description: Asparagus officinalis aof-miR12170 mature miRNA
• Sequence: 11 - UAAGAACUCAUGAAUAAAUGCA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279