Stem-loop aof-MIR12172

Accession

MI0040551

Description

Asparagus officinalis aof-MIR12172 precursor miRNA

Sequence

auauuugagcCACGUGACUGUUCCUUUCAAAuuuauggagacuuugugggaauuuugauaacuaaguagucuauugaaaugcaauuacucuggcuccuucaa
......((((((.((((.(((...(((((.....(((((.((((.((.............)).))))..)))))))))).))).))))..))))))......

Structure

auauuu      -C    C   UCC     AAuuu     -g    u  gggaa 
      gagcCA  GUGA UGU   UUUCA     augga  acuu gu     u
      ||||||  |||| |||   |||||     |||||  |||| ||     u
      cucggu  cauu acg   aaagu     uaucu  ugaa ca     u
aacuuc      cu    a   --u     -----     ga    u  auagu 

Annotation confidence Not enough data

Genome context

chr1: 110392623-110392724 [+]

Mature aof-miR12172

• Accession: MIMAT0049757
• Description: Asparagus officinalis aof-miR12172 mature miRNA
• Sequence: 11 - CACGUGACUGUUCCUUUCAAA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279