Stem-loop aof-MIR12173

Accession

MI0040553

Description

Asparagus officinalis aof-MIR12173 precursor miRNA

Sequence

agcccguauuUAUGAAUUUCCGCUGUAGUUUuggggcgugacagaaagaugguaucagagcugaggcuauagguccuaaauuauuuuggagaugguuaagaaauggaaa
...((((.((((...(((((((..(((((((.(((((.(.........(((((.(((....))).)))))).))))))))))))..)))))))...))))..))))...

Structure

agc    -a    UGA       CU       u     g gacagaaag     a   g 
   ccgu  uuUA   AUUUCCG  GUAGUUU ggggc u         auggu uca a
   ||||  ||||   |||||||  ||||||| ||||| |         ||||| |||  
   ggua  gaau   uagaggu  uauuaaa uccug a         uaucg agu g
aaa    aa    ugg       uu       -     g ---------     g   c 

Annotation confidence Not enough data

Genome context

chr2: 59690252-59690360 [+]

Mature aof-miR12173

• Accession: MIMAT0049759
• Description: Asparagus officinalis aof-miR12173 mature miRNA
• Sequence: 11 - UAUGAAUUUCCGCUGUAGUUU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279