Stem-loop aof-MIR12175

Accession

MI0040556

Description

Asparagus officinalis aof-MIR12175 precursor miRNA

Sequence

aggggucggaugaaaucauuauaauuucugauggugaugacucaauuggaacaacuucuaccacgagauccucauccucaacauguucaagcucagacucggaugaaucuaucauaacaacuucuacagguucgaccuccggugagucuggggucauaugauuagccauuaucaaauUUGGAUCAGUUUCAUCAGAAGuguaucccca
.((((((.((((((((............(((.(((((.(((((...(((((....)))))....))).)).))))).))).(((((...(.(((((((((((((((((((.................)))))))...)))...))))))))).).))))).....(((..........)))....)))))))).)).......)))).

Structure

a    -------  g        cauuauaauuucugauggugaugacucaauuggaacaacuucuaccacgagauccucauccucaacauguucaagcucagacucggaugaaucuaucauaacaacuucuacagguucgaccuccggugagucuggggucauaugauuag   uuau 
 gggg       uc gaugaaau                                                                                                                                                     cca    c
 ||||       || ||||||||                                                                                                                                                     |||     
 cccc       AG CUACUUUG                                                                                                                                                     GGU    a
a    uauguGA  A        -------------------------------------------------------------------------------------------------------------------------------------------------ACUA   Uuaa 

Annotation confidence Not enough data

Genome context

chr8: 128682288-128682495 [-]

Mature aof-miR12175

• Accession: MIMAT0049762
• Description: Asparagus officinalis aof-miR12175 mature miRNA
• Sequence: 178 - UUGGAUCAGUUUCAUCAGAAG - 198
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279