Stem-loop aof-MIR12176

Accession

MI0040557

Description

Asparagus officinalis aof-MIR12176 precursor miRNA

Sequence

ccugauuggaUUCUAGUAGCAUUGCAUGGACaaccuuuagaccuugcaggucuaucaggaucaugaccuguaauuugagga
........((((((.((((..(((((.((.(........).)).)))))..)))).))))))....(((........))).

Structure

-----------ccugauug      A    CA     U  A aac 
                   gaUUCU GUAG  UUGCA GG C   c
                   |||||| ||||  ||||| || |    
                   cuagga uauc  gacgu cc g   u
aggaguuuaauguccagua      c    ug     u  a auu 

Annotation confidence Not enough data

Genome context

chr4: 49519373-49519453 [-]

Mature aof-miR12176

• Accession: MIMAT0049763
• Description: Asparagus officinalis aof-miR12176 mature miRNA
• Sequence: 11 - UUCUAGUAGCAUUGCAUGGAC - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279