Stem-loop aof-MIR12177

Accession

MI0040558

Description

Asparagus officinalis aof-MIR12177 precursor miRNA

Sequence

99 reads, 31.0 reads per million, 8 experiments

ucuacuuUCCUGAUGUGCAUCAUGUGUUcugauguuacaucuugcaugugauguuuucauucuauuccuuguguuagaucuaacaCCAGAACAGAUGGUACACCUCaggaaaguag
.((((((((((((.(((.(((((.(((((((.(((((.((((.((((((((.....))))..........)))).)))).))))).))))))).))))).))).))))))))))))

Structure

u            U   C     G       a     c    u    ----------    u 
 cuacuuUCCUGA GUG AUCAU UGUUcug uguua aucu gcau          guga g
 |||||||||||| ||| ||||| ||||||| ||||| |||| ||||          |||| u
 gaugaaaggaCU CAC UGGUA ACAAGAC acaau uaga ugug          uacu u
-            C   A     G       C     c    u    uuccuuaucu    u 

Annotation confidence Low

Genome context

chr5: 45141019-45141134 [+]

Mature aof-miR12177-5p

• Accession: MIMAT0060720
• Description: Asparagus officinalis aof-miR12177-5p mature miRNA
• Sequence: 8 - UCCUGAUGUGCAUCAUGUGUU - 28
• Evidence: experimental ; unknown

Mature aof-miR12177-3p

• Accession: MIMAT0049764
• Description: Asparagus officinalis aof-miR12177-3p mature miRNA
• Sequence: 86 - CCAGAACAGAUGGUACACCUC - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279