Stem-loop aof-MIR156a

Accession

MI0040559

Description

Asparagus officinalis aof-MIR156a precursor miRNA

Literature search

3 open access papers mention aof-MIR156a
(9 sentences)

Sequence

uaauggagguUGACAGAAGAGAGUGAGCACucaugguuuucuugcauacaguucaugcuugaagcuaugcgugcucacuucucuuucugucacccaccacca
...(((.((.((((((((((((((((((((.((((((((.(..((((.......))))..))))))))).)))))))).)))).)))))))).)).)))...

Structure

uaa   a  u        -    -        u        u uu    ac 
   ugg gg UGACAGAA GAGA GUGAGCAC caugguuu c  gcau  a
   ||| || |||||||| |||| |||||||| |||||||| |  ||||  g
   acc cc acugucuu cucu cacucgug guaucgaa g  cgua  u
acc   a  c        u    u        c        - uu    cu 

Annotation confidence Not enough data

Genome context

chr2: 18070344-18070445 [-]

Mature aof-miR156a

• Accession: MIMAT0049765
• Description: Asparagus officinalis aof-miR156a mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279