Stem-loop aof-MIR156b

Accession

MI0040560

Description

Asparagus officinalis aof-MIR156b precursor miRNA

Literature search

3 open access papers mention aof-MIR156b
(9 sentences)

Sequence

789 reads, 265.0 reads per million, 10 experiments

gagagaagggcauuggugauguuugUUGACAGAAGAUAGAGAGCACagaugaugaaaugcuaacuggcucauugcaucucauuccuuuguGCUCUCUAUGCUUCUGUCAUCaccuucagccucccuuugugcaaca
.((((..((((...(((((.......(((((((((((((((((((((((.(((((.((((.............)))).)))))..)))))))))))))).))))))))))))))....))))..))))........

Structure

-------g    aa    -auu     uguuugU         -              -u     a    uaacu 
        agag  gggc    gguga       UGACAGAAG AUAGAGAGCACaga  gauga augc     g
        ||||  ||||    |||||       ||||||||| ||||||||||||||  ||||| ||||     g
        uuuc  uccg    ccaCU       ACUGUCUUC UAUCUCUCGuguuu  uuacu uacg     c
acaacgug    cc    acuu     -------         G              cc     c    uuacu 

Annotation confidence High

Genome context

chr1: 113364898-113365033 [-]

Mature aof-miR156b-5p

• Accession: MIMAT0049766
• Description: Asparagus officinalis aof-miR156b-5p mature miRNA
• Sequence: 26 - UUGACAGAAGAUAGAGAGCAC - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR156b-3p

• Accession: MIMAT0060721
• Description: Asparagus officinalis aof-miR156b-3p mature miRNA
• Sequence: 91 - GCUCUCUAUGCUUCUGUCAUC - 111
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279