Stem-loop aof-MIR160a

Accession

MI0040563

Description

Asparagus officinalis aof-MIR160a precursor miRNA

Literature search

2 open access papers mention aof-MIR160a
(2 sentences)

Sequence

uaaugaagccUGCCUGGCUCCCUGAAUGCCAucugagaagcuuaucaaaagaguuugaugcaccuccuaguuggcauacagggcagccaagcagacauauaua
.........((((.((((((((((.((((((.(((((..((..((((((....))))))))..)))..)).)))))).))))).))))).)))).........

Structure

uaaugaagc    C     -     A      u  --   aa  uu      a 
         cUGC UGGCU CCCUG AUGCCA cu  gag  gc  aucaaa g
         |||| ||||| ||||| |||||| ||  |||  ||  ||||||  
         gacg accga gggac uacggu ga  cuc  cg  uaguuu a
auauauaca    a     c     a      u  uc   ca  --      g 

Annotation confidence Not enough data

Genome context

chr1: 130465997-130466099 [+]

Mature aof-miR160a

• Accession: MIMAT0049769
• Description: Asparagus officinalis aof-miR160a mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGAAUGCCA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279