Stem-loop aof-MIR167b

Accession

MI0040572

Description

Asparagus officinalis aof-MIR167b precursor miRNA

Literature search

2 open access papers mention aof-MIR167b
(18 sentences)

Sequence

57730 reads, 26153.0 reads per million, 10 experiments

gauuguuuagugcaccaaaaguagcUGAAGCUGCCAGCAUGAUCUGAucuauuuuugcccuuaucauagaaaggcgcaucAGAUCAUGUUGCAGUUUCAUCugcugaugggagcacaagauaaacc
..((((((.((((.(((..(((((.(((((((((.((((((((((((........(((((((........)))).)))))))))))))))))))))))).)))))..)))..)))).))))))...

Structure

-ga      a    -a   aa     c         C            ucuauuuu   -    auc 
   uuguuu gugc  cca  aguag UGAAGCUGC AGCAUGAUCUGA        ugc ccuu   a
   |||||| ||||  |||  ||||| ||||||||| ||||||||||||        ||| ||||    
   aauaga cacg  ggu  ucguC ACUUUGACG UUGUACUAGAcu        acg ggaa   u
cca      a    ag   ag     U         -            --------   c    aga 

Annotation confidence High

Genome context

chr3: 12027535-12027660 [+]

Mature aof-miR167b-5p

• Accession: MIMAT0049778
• Description: Asparagus officinalis aof-miR167b-5p mature miRNA
• Sequence: 26 - UGAAGCUGCCAGCAUGAUCUGA - 47
• Evidence: experimental ; Illumina [1]

Mature aof-miR167b-3p

• Accession: MIMAT0060731
• Description: Asparagus officinalis aof-miR167b-3p mature miRNA
• Sequence: 81 - AGAUCAUGUUGCAGUUUCAUC - 101
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279