Stem-loop aof-MIR168a

Accession

MI0040574

Description

Asparagus officinalis aof-MIR168a precursor miRNA

Literature search

1 open access papers mention aof-MIR168a
(1 sentences)

Sequence

170635 reads, 34551.0 reads per million, 10 experiments

cuguuucaucgcuguucucucggauUCGCUUGGUGCAGGUCGGGAAcggucugccgccguacgaucagaucagguuccgaucagauucgauccuguccguccauugggcggcucaguuCCCGCCGUGCAUCAAGUGAAUucgagaguguccggcgaaaggacga
.(((((..((((((..(((((((((((((((((((((((.(((((((.....((((((....(((..((.((((.((.((......)))).)))))).))).....))))))...))))))))).)))))))))))))))))))))....))))))..))))).

Structure

c     ca      --uu                     -  U       ggucu      -guac   ca  u    u  c  uc 
 uguuu  ucgcug    cucucggauUCGCUUGGUGCA GG CGGGAAc     gccgcc     gau  ga cagg uc ga  a
 |||||  ||||||    ||||||||||||||||||||| || |||||||     ||||||     |||  || |||| || ||   
 gcagg  agcggc    gagagcuUAAGUGAACUACGU CC GCCCuug     cggcgg     cug  cu gucc ag cu  g
a     aa      cugu                     G  -       --acu      guuac   -c  -    u  -  ua 

Annotation confidence High

Genome context

KV863983.1: 71877-72040 [+]

Mature aof-miR168a-5p

• Accession: MIMAT0049780
• Description: Asparagus officinalis aof-miR168a-5p mature miRNA
• Sequence: 26 - UCGCUUGGUGCAGGUCGGGAA - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR168a-3p

• Accession: MIMAT0060733
• Description: Asparagus officinalis aof-miR168a-3p mature miRNA
• Sequence: 119 - CCCGCCGUGCAUCAAGUGAAU - 139
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279