Stem-loop aof-MIR168b

Accession

MI0040575

Description

Asparagus officinalis aof-MIR168b precursor miRNA

Literature search

1 open access papers mention aof-MIR168b
(1 sentences)

Sequence

308697 reads, 62734.0 reads per million, 10 experiments

uuucgauuucgcguccgccucugauUCGCUUGGUGCAGGUCGGGUCcgccucgauccggcauccggcgacggcgauggcggcggaUCCCGCCUUGCAUCAACUGAAUcggaggcggaucagcgaguggauug
..((.(((.(((((((((((((((((((.((((((((((.((((((((((.(.((((((...)))((....))))).).)))))).)))).)))))))))).))))))))))))))))..)))))).))...

Structure

-uu  g   u   --                C          U    -      u g   --------   c 
   uc auu cgc  guccgccucugauUCG UUGGUGCAGG CGGG UCcgcc c auc        cgg  
   || ||| |||  |||||||||||||||| |||||||||| |||| |||||| | |||        ||| a
   ag uga gcg  uaggcggaggcUAAGU AACUACGUUC GCCC aggcgg g uag        gcc  
guu  g   -   ac                C          C    U      c g   cggcagcg   u 

Annotation confidence High

Genome context

chr4: 143360978-143361109 [+]

Mature aof-miR168b-5p

• Accession: MIMAT0049781
• Description: Asparagus officinalis aof-miR168b-5p mature miRNA
• Sequence: 26 - UCGCUUGGUGCAGGUCGGGUC - 46
• Evidence: experimental ; Illumina [1]

Mature aof-miR168b-3p

• Accession: MIMAT0060734
• Description: Asparagus officinalis aof-miR168b-3p mature miRNA
• Sequence: 86 - UCCCGCCUUGCAUCAACUGAAU - 107
• Evidence: experimental ; unknown

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279