Stem-loop aof-MIR169a

Accession

MI0040576

Description

Asparagus officinalis aof-MIR169a precursor miRNA

Literature search

1 open access papers mention aof-MIR169a
(1 sentences)

Sequence

cuaccuuuggUAGCCAAGGAUGAUUUGCCUAuaugcucauugagaccuuugguagcuugaguuauagaaauauugagaucuuaauguugguucauaggcaacuccuuggcuaugcuaagugguuc
..((((((((((((((((((.(..((((((((..(((((((((((.(((..(((((....))))).........))).))))))))..)))..))))))))))))))))))..)))))).)))..

Structure

cu   -      --         U AU        au   --        c   -------ug     u 
  acc uuuggU  AGCCAAGGA G  UUGCCUAu  gcu  cauugaga cuu         guagc u
  ||| ||||||  ||||||||| |  ||||||||  |||  |||||||| |||         |||||  
  ugg gaaucg  ucgguuccu c  aacggaua  ugg  guaauucu gag         uauug g
cu   u      ua         - --        cu   uu        a   uuauaaaga     a 

Annotation confidence Not enough data

Genome context

chr2: 81968177-81968301 [-]

Mature aof-miR169a

• Accession: MIMAT0049782
• Description: Asparagus officinalis aof-miR169a mature miRNA
• Sequence: 11 - UAGCCAAGGAUGAUUUGCCUA - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279