Stem-loop aof-MIR169b

Accession

MI0040577

Description

Asparagus officinalis aof-MIR169b precursor miRNA

Literature search

1 open access papers mention aof-MIR169b
(1 sentences)

Sequence

cuaucuuugcUAAGCCAAGGAUGACUUGCCUauguacucuugagaaauuuugguaguucgagauaaacacaaaaucucaaaguggauaaguaggcaagcauccuggcuuuguuaaguggc
(((.(((.((.((((((.(((((.(((((((((.((((.((((((..(((((((............)).))))))))))))))).)....))))))))))))))))))).)).)))))).

Structure

-   u   u  U      A     A        ---- g    c      aa     -  aguuc 
 cua cuu gc AAGCCA GGAUG CUUGCCUa    u uacu uugaga  uuuug gu     g
 ||| ||| || |||||| ||||| ||||||||    | |||| ||||||  ||||| ||      
 ggu gaa ug uucggu ccuac gaacggau    a guga aacucu  aaaac ca     a
c   -   u  u      -     -        gaau g    -      --     a  aauag 

Annotation confidence Not enough data

Genome context

chr1: 2604704-2604823 [-]

Mature aof-miR169b

• Accession: MIMAT0049783
• Description: Asparagus officinalis aof-miR169b mature miRNA
• Sequence: 11 - UAAGCCAAGGAUGACUUGCCU - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279