Stem-loop aof-MIR169c

Accession

MI0040578

Description

Asparagus officinalis aof-MIR169c precursor miRNA

Literature search

1 open access papers mention aof-MIR169c
(1 sentences)

Sequence

auaucuuuggUAGCCAAGGAUGACUUGCCUauguugcuaguaguucucaaaaugugacuaaaucucauuuauauggggguucauaggcagucuccuuggcuacccuaagcggc
....(((.((((((((((((.((((.(((((((..(((..(((((..((...)).)))))...(((((....)))))))).)))))))))))))))))))))))..)))....

Structure

auau   -u            U    U       uu   ---------------ag     cu  a 
    cuu  ggUAGCCAAGGA GACU GCCUaug  gcu                 uaguu  ca  
    |||  |||||||||||| |||| |||||||  |||                 |||||  || a
    gaa  ccaucgguuccu cuga cggauac  ugg                 aucag  gu  
cggc   uc            -    -       -u   ggguauauuuacucuaa     -u  a 

Annotation confidence Not enough data

Genome context

chr10: 7883321-7883433 [+]

Mature aof-miR169c

• Accession: MIMAT0049784
• Description: Asparagus officinalis aof-miR169c mature miRNA
• Sequence: 11 - UAGCCAAGGAUGACUUGCCU - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279