Stem-loop aof-MIR172

Accession

MI0040582

Description

Asparagus officinalis aof-MIR172 precursor miRNA

Literature search

2 open access papers mention aof-MIR172
(14 sentences)

Sequence

4644 reads, 1924.0 reads per million, 10 experiments

cuguuugcagguGCAGCAUCUUCAAGAUUCACAauauuauugagaggccuccuuugauuuacucagggacuugAGAAUCUUGAUGAUGCUGCAUcagcaauaag
((..((((.(((((((((((.(((((((((.(((.....((((((((.(......).))).)))))....))).))))))))).))))))))))).))))..))

Structure

  gu    a           U         A   uauua     -   c uc 
cu  uugc gguGCAGCAUC UCAAGAUUC CAa     uugag agg c  c
||  |||| ||||||||||| ||||||||| |||     ||||| ||| |   
ga  aacg cUACGUCGUAG AGUUCUAAG guu     gacuc uuu g  u
  au    a           U         A   -cagg     a   a uu 

Annotation confidence High

Genome context

chr2: 1575430-1575533 [-]

Mature aof-miR172-5p

• Accession: MIMAT0060739
• Description: Asparagus officinalis aof-miR172-5p mature miRNA
• Sequence: 13 - GCAGCAUCUUCAAGAUUCACA - 33
• Evidence: experimental ; unknown

Mature aof-miR172-3p

• Accession: MIMAT0049788
• Description: Asparagus officinalis aof-miR172-3p mature miRNA
• Sequence: 74 - AGAAUCUUGAUGAUGCUGCAU - 94
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279