Stem-loop aof-MIR2118c

Accession

MI0040584

Description

Asparagus officinalis aof-MIR2118c precursor miRNA

Literature search

1 open access papers mention aof-MIR2118c
(1 sentences)

Sequence

cuaagagcugcaggauugggagugucgagagaaaaauacuauuuccuaacucugucaauaauggucgagauggguaauugguuaUUUCCGAUGCCACCCAAUCCUUugguucuuau
.(((((((((.(((((((((.((((((.((((.....((((.((((((.(((..(((....)))..))).)))).)).))))..))))))))))..))))))))).))))))))).

Structure

c         c         -a      a    aaaau    u  -    a   ug   a 
 uaagagcug aggauuggg  gugucg gaga     acua uu ccua cuc  uca u
 ||||||||| |||||||||  |||||| ||||     |||| || |||| |||  |||  
 auucuuggu UCCUAACCC  CGUAGC CUUU     uggu aa gggu gag  ggu a
u         U         AC      -    ---au    u  u    a   cu   a 

Annotation confidence Low

Genome context

chr1: 113061987-113062102 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from aof-MIR2118c

Mature aof-miR2118c

• Accession: MIMAT0049790
• Description: Asparagus officinalis aof-miR2118c mature miRNA
• Sequence: 85 - UUUCCGAUGCCACCCAAUCCUU - 106
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279