Stem-loop aof-MIR2275a

Accession

MI0040586

Description

Asparagus officinalis aof-MIR2275a precursor miRNA

Literature search

1 open access papers mention aof-MIR2275a
(1 sentences)

Sequence

guuuugaaugugagaguugcaggaaacugaacacguuuaccacuuauaaacaggUUCGGUUUCCUCCAACAUCUCAucuucaaugg
...(((((.((((((((((.((((((((((((..(((((.......)))))..)))))))))))).)))).)))))).)))))...

Structure

guu     u      -    c            ac     cc 
   uugaa gugaga guug aggaaacugaac  guuua  a
   ||||| |||||| |||| ||||||||||||  |||||  c
   aacuu uACUCU CAAC UCCUUUGGCUUg  caaau  u
ggu     c      A    C            ga     au 

Annotation confidence Low

Genome context

chr4: 143037683-143037768 [+]

Mature aof-miR2275a

• Accession: MIMAT0049792
• Description: Asparagus officinalis aof-miR2275a mature miRNA
• Sequence: 55 - UUCGGUUUCCUCCAACAUCUCA - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279