Stem-loop aof-MIR2275c

Accession

MI0040588

Description

Asparagus officinalis aof-MIR2275c precursor miRNA

Sequence

ugcaauuuugUUUGAUUUCCUCCAAUAUCUCAcuuucaacugcucaauuguuccauuaucaagaacucauauuaugcgcgaugguauugaaugugagaauugggggaaagugaagcuaugcau
((((.....((((.((((((((((((.((((((.(((((.((((..(((((..(((.................))).)))))))))))))).)))))))))))))).)))).))))..)))).

Structure

-    auuuu    G    -        A      u     c    ca     uc   uaucaag 
 ugca     gUUU AUUU CCUCCAAU UCUCAc uucaa ugcu  auugu  cau       a
 ||||     |||| |||| |||||||| |||||| ||||| ||||  |||||  |||       a
 acgu     cgaa ugaa ggggguua agagug aaguu augg  uagcg  gua       c
u    ---au    g    a        -      u     -    --     -c   uuauacu 

Annotation confidence Not enough data

Genome context

chr4: 142464985-142465107 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from aof-MIR2275c

Mature aof-miR2275c

• Accession: MIMAT0049794
• Description: Asparagus officinalis aof-miR2275c mature miRNA
• Sequence: 11 - UUUGAUUUCCUCCAAUAUCUCA - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279