Stem-loop aof-MIR319a

Accession

MI0040589

Description

Asparagus officinalis aof-MIR319a precursor miRNA

Literature search

2 open access papers mention aof-MIR319a
(2 sentences)

Sequence

gaauaggauccccugaagagagcuuccuucaguccacucaugggcagcuguaggguugaauuagcugcugacucauucauucaaauacuaagucagagaaagagacuugguagaugagugaaugaugcaggagauaaaguuagacucuaugcggucuuugcUUGGACUGAAGGGAGCUCCCUucgucuauag
....(((....)))((((.(((((((((((((((((..((.((((.((.((((((((.((((..((.(((..(((((((((((..(((((((((.........)))))))))..)))))))))))..))).))....)))).)))))))))).)))).))..))))))))))))))))).))))........

Structure

gaauaggauccccu    a                 cu  u    a  u        g    --ag  g   ac           aa         aga 
              gaag gagcuuccuucagucca  ca gggc gc guaggguu aauu    cu cug  ucauucauuca  uacuaaguc   g
              |||| |||||||||||||||||  || |||| || |||||||| ||||    || |||  |||||||||||  |||||||||   a
              cuUC CUCGAGGGAAGUCAGGU  gu ucug cg uaucucag uuga    ga gac  aguaagugagu  augguucag   a
------gauaucug    C                 Uc  u    g  -        a    aaua  g   gu           ag         aga 

Annotation confidence Not enough data

Genome context

chr5: 113982298-113982489 [+]

Mature aof-miR319a

• Accession: MIMAT0049795
• Description: Asparagus officinalis aof-miR319a mature miRNA
• Sequence: 162 - UUGGACUGAAGGGAGCUCCCU - 182
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279