Stem-loop aof-MIR393a

Accession

MI0040592

Description

Asparagus officinalis aof-MIR393a precursor miRNA

Literature search

1 open access papers mention aof-MIR393a
(3 sentences)

Sequence

cgaggaagcaUCCAAAGGGAUCGCAUUGAUUCucacuugauuaauuaguucagaauuaagcuaauuaauuuugauauccgccgagggaaucaugcgguccuuuuggaagucuccucu
.(((((.((.((((((((((((((((.(((((((....((((((((((((........))))))))))))(((........)))))))))))))))))))))))))).)).))))).

Structure

c     a  a                U       ----------acuu            cag 
 gagga gc UCCAAAGGGAUCGCAU GAUUCuc              gauuaauuaguu   a
 ||||| || |||||||||||||||| |||||||              ||||||||||||    
 cuccu ug agguuuuccuggcgua cuaaggg              uuaauuaaucga   a
u     c  a                -       agccgccuauaguu            auu 

Annotation confidence Not enough data

Genome context

chr7: 1318320-1318436 [+]

Mature aof-miR393a

• Accession: MIMAT0049798
• Description: Asparagus officinalis aof-miR393a mature miRNA
• Sequence: 11 - UCCAAAGGGAUCGCAUUGAUUC - 32
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279