Stem-loop aof-MIR394

Accession

MI0040594

Description

Asparagus officinalis aof-MIR394 precursor miRNA

Literature search

1 open access papers mention aof-MIR394
(1 sentences)

Sequence

gagaaaucuuUUGGCAUUCUGUCCACCUCCauaacuuagccauucucauuucagauguagaaugauaaauaaaugaagaacaggagguggauaguuugccaacagagcucu
.(((..(((.((((((..((((((((((((....(((...((((((((((...)))).))))))...........)))....))))))))))))..)))))).)))..)))

Structure

g   aa   u      UU            auaa   --------agc      -    u 
 aga  ucu UUGGCA  CUGUCCACCUCC    cuu           cauucu cauu  
 |||  ||| ||||||  ||||||||||||    |||           |||||| |||| c
 ucu  aga aaccgu  gauagguggagg    gaa           guaaga guag  
-   cg   c      uu            acaa   guaaauaaaua      u    a 

Annotation confidence Not enough data

Genome context

chr7: 86034008-86034118 [-]

Mature aof-miR394

• Accession: MIMAT0049800
• Description: Asparagus officinalis aof-miR394 mature miRNA
• Sequence: 11 - UUGGCAUUCUGUCCACCUCC - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279