Stem-loop aof-MIR395b

Accession

MI0040596

Description

Asparagus officinalis aof-MIR395b precursor miRNA

Sequence

guuguccucuggaguucccucagacacuucacuaaagauaucugaaguauugaggacguuucgucucuaAUGAAGUGUAUGGGGGAACUCuggcgggcaa
.((((((.((((((((((((((.((((((((((..((....))..)))((((.(((((...))))).))))))))))).)))))))))))))).))))))

Structure

g      u              g       acuaaagauaucugaagu    a     u 
 uugucc cuggaguucccuca acacuuc                  auug ggacg  
 |||||| |||||||||||||| |||||||                  |||| ||||| u
 aacggg gguCUCAAGGGGGU UGUGAAG                  UAau ucugc  
-      c              A       ------------------    c     u 

Annotation confidence Not enough data

Genome context

chr7: 142801792-142801891 [+]

Mature aof-miR395b

• Accession: MIMAT0049802
• Description: Asparagus officinalis aof-miR395b mature miRNA
• Sequence: 70 - AUGAAGUGUAUGGGGGAACUC - 90
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279