Stem-loop aof-MIR398

Accession

MI0040599

Description

Asparagus officinalis aof-MIR398 precursor miRNA

Literature search

1 open access papers mention aof-MIR398
(1 sentences)

Sequence

1049 reads, 305.0 reads per million, 10 experiments

aagcaaacggagaugagcuccgacuGGAGCGACCUGCUGACACAUGguuccggcaaugaauuccgacgaagguccaUGUGUUCUCAGGUCGCCCCUGccgggccuaaucuccaccgcuucug
((((....((((((..((.(((.(.((.((((((((..(((((((((..((..(.............)..)).)))))))))..)))))))).)).).)))))...))))))...))))...

Structure

---    aaac      -ga  u   a u  A        CU         uu  gg aauga 
   aagc    ggagau   gc ccg c GG GCGACCUG  GACACAUGg  cc  c     a
   ||||    ||||||   || ||| | || ||||||||  |||||||||  ||  |     u
   uucg    ccucua   cg ggc G CC CGCUGGAC  UUGUGUacc  gg  g     u
guc    -cca      auc  -   c U  C        UC         -u  aa cagcc 

Annotation confidence High

Genome context

chr4: 6185510-6185631 [-]

Mature aof-miR398-5p

• Accession: MIMAT0060744
• Description: Asparagus officinalis aof-miR398-5p mature miRNA
• Sequence: 26 - GGAGCGACCUGCUGACACAUG - 46
• Evidence: experimental ; unknown

Mature aof-miR398-3p

• Accession: MIMAT0049805
• Description: Asparagus officinalis aof-miR398-3p mature miRNA
• Sequence: 77 - UGUGUUCUCAGGUCGCCCCUG - 97
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279