Stem-loop aof-MIR477a

Accession

MI0040604

Description

Asparagus officinalis aof-MIR477a precursor miRNA

Sequence

gugguugcucACUCUCCCUCAAGGGCUUCCGacucagccauuauuaaugcgggauugugcaacgagaguuugauuggcauaaguuggaagcucuuguuugggugggguggggggggauugaacagccucu
.......(((((((((((.(((((((((((((((..((((..(((((((((......))))........)))))))))...)))))))))))))))...))).))))))))(((((.........)))))

Structure

------------gugguug        -   --U               -ca    uu     --------    gg 
                   cucACUCU CCC   CAAGGGCUUCCGacu   gcca  auuaa        ugcg  a
                   |||||||| |||   |||||||||||||||   ||||  |||||        ||||   
                   gggugggg ggg   guucucgaagguuga   cggu  uaguu        acgu  u
ucuccgacaaguuaggggg        u   uuu               aua    --     ugagagca    gu 

Annotation confidence Not enough data

Genome context

chr1: 106823710-106823839 [+]

Mature aof-miR477a

• Accession: MIMAT0049810
• Description: Asparagus officinalis aof-miR477a mature miRNA
• Sequence: 11 - ACUCUCCCUCAAGGGCUUCCG - 31
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279