Stem-loop aof-MIR5139a

Accession

MI0040608

Description

Asparagus officinalis aof-MIR5139a precursor miRNA

Sequence

aauuaauauaGAAACCUGGCUCUGAUACCAauuguuggacccuagagggggggugauuagggucaagaggcucuaauaugcaa
........((((..((((((((((((.((((...))))(((((......))))).))))))))).)).)..))))........

Structure

aauuaaua    AA -  -         ----------------A    u 
        uaGA  C CU GGCUCUGAU                 CCAa  
        ||||  | || |||||||||                 |||| u
        aucu  g ga cugggauua                 gguu  
aacguaua    cg a  a         gugggggggagauccca    g 

Annotation confidence Not enough data

Genome context

chr5: 120387925-120388007 [+]

Mature aof-miR5139a

• Accession: MIMAT0049814
• Description: Asparagus officinalis aof-miR5139a mature miRNA
• Sequence: 11 - GAAACCUGGCUCUGAUACCA - 30
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279