Stem-loop aof-MIR8155

Accession

MI0040611

Description

Asparagus officinalis aof-MIR8155 precursor miRNA

Sequence

6071 reads, 1967.0 reads per million, 10 experiments

ucacUCUGAAUGGUCUUCGCGCCAGAAGcaccacccucaacacccgaagcaccuucuuuccccgacaucuuucuuaacgcaccaaucgaaugaagaauagauccaaaacuaaaaagauagagucuuuaccaaaagaucccaccuuuaucaccaaacgaagcccuagacgagccuccaaauugaucuacuccuccaaauagcucaaguGUAACCUGGCUCUGAUACCAcuuauugugu
.(((..(((.((((..(((.(((((..((((..............((((...))))..........(((((((((....(.......)....))))).)))).............((((((((((((....)))))......))))))).......((.((.(.....).)).))....((((.(((..........))).))))))))...)))))..))).)))).)))..))).

Structure

u   UC   A    CU   -C     -AA    cacccucaacacccgaagcaccuucuuuccccgacaucuuucuuaacgcaccaaucgaaugaagaauagauccaaaacuaaaaa       ------     a 
 cac  UGA UGGU  UCG  GCCAG   Gcac                                                                                    gauagag      ucuuu c
 |||  ||| ||||  |||  |||||   ||||                                                                                    |||||||      |||||  
 gug  auu ACCA  AGU  CGGUC   UGug                                                                                    cuauuuc      agaaa c
u   uu   c    -U   CU     CAA    ----------------------------aacucgauaaaccuccucaucuaguuaaaccuccgagcagaucccgaagcaaacca       cacccu     a 

Annotation confidence Low

Genome context

chr4: 100359278-100359514 [+]

Mature aof-miR8155-5p

• Accession: MIMAT0060754
• Description: Asparagus officinalis aof-miR8155-5p mature miRNA
• Sequence: 5 - UCUGAAUGGUCUUCGCGCCAGAAG - 28
• Evidence: experimental ; unknown

Mature aof-miR8155-3p

• Accession: MIMAT0049817
• Description: Asparagus officinalis aof-miR8155-3p mature miRNA
• Sequence: 208 - GUAACCUGGCUCUGAUACCA - 227
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 29093472
   The asparagus genome sheds light on the origin and evolution of a young Y chromosome
   Harkess A, Zhou J, Xu C, Bowers JE, Van der Hulst R, Ayyampalayam S, Mercati F, Riccardi P, McKain MR, Kakrana A, Tang H, Ray J, Groenendijk J, Arikit S, Mathioni SM, Nakano M, Shan H, Telgmann-Rauber A, Kanno A, Yue Z, Chen H, Li W, Chen Y, Xu X, Zhang Y
   Nat Commun (2017) 8:1279