miRBase entry: gga-mir-12226

Stem-loop gga-mir-12226


Accession
MI0040681
Description
Gallus gallus gga-mir-12226 precursor miRNA


Sequence

30 reads, 1 reads per million, 2 experiments
GUGAGGCGGCGGUCGGGACGCGcggcaucuccgccccgCGGCCCGCCGCGGCCCUCACGCCu
(((((((.((((.((((.((((.(((......))).)))).)))))))).).))))))....

Structure
----      - G    U    A    c   au 
    GUGAGG C GCGG CGGG CGCG ggc  c
    |||||| | |||| |||| |||| |||   
    CACUCC G CGCC GCCC GCgc ccg  u
uCCG      C G    -    G    c   cc 


Annotation confidence Not enough data
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Genome context
chr15: 743032-743093 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from gga-mir-12226
Name Accession Chromosome Start End Strand Confidence




Database links

Mature gga-miR-12226-5p

Accession MIMAT0049929
Description Gallus gallus gga-miR-12226-5p mature miRNA
Sequence 1 - GUGAGGCGGCGGUCGGGACGCG - 22
Evidence experimental
Illumina [1]

Mature gga-miR-12226-3p

Accession MIMAT0049930
Description Gallus gallus gga-miR-12226-3p mature miRNA
Sequence 39 - CGGCCCGCCGCGGCCCUCACGCC - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 29079676
    Sex-biased microRNA expression in mammals and birds reveals underlying regulatory mechanisms and a role in dosage compensation
    "Warnefors M, Mossinger K, Halbert J, Studer T, VandeBerg JL, Lindgren I, Fallahshahroudi A, Jensen P, Kaessmann H"
    Genome Res (2017) 12:1961-1973