Stem-loop pae-mir-543

Accession

MI0041905

Description

Pongo abelii pae-mir-543 precursor miRNA

Sequence

ucaacggugcugacgugcgguacuuaaugaGAAGUUGCCCGUGUUUUUUUCGcuuuauuugugacgAAACAUUCGCGGUGCACUUCUUuuucaguauccuauucugccuugaagacgu
((((.(((...((.(((.((((((.((.(((((((.(((((((..(.((((((.........).))))).)..))))).))))))))).)).)))))).))))).)))))))......

Structure

------    c   gcu  c   c      u  u       U  -     UU U     - uuu 
      ucaa ggu   ga gug gguacu aa gaGAAGU GC CCGUG  U UUUCG c   a
      |||| |||   || ||| |||||| || ||||||| || |||||  | ||||| |   u
      aguu ccg   cu uau cuauga uu UUCUUCA CG GGCGC  A AAAgc g   u
ugcaga    -   --u  -   c      c  u       -  U     UU C     a ugu 

Annotation confidence Not enough data

Genome context

CM054694.2: 105463007-105463064 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from pae-mir-543

Mature pae-miR-543-5p

• Accession: MIMAT0063223
• Description: Pongo abelii pae-miR-543-5p mature miRNA
• Sequence: 31 - GAAGUUGCCCGUGUUUUUUUCG - 52
• Evidence: not_experimental

Mature pae-miR-543-3p

• Accession: MIMAT0063222
• Description: Pongo abelii pae-miR-543-3p mature miRNA
• Sequence: 67 - AAACAUUCGCGGUGCACUUCUU - 88
• Evidence: not_experimental

References