Stem-loop rph-mir-1175

Accession

MI0042849

Description

Ruditapes philippinarum rph-mir-1175 precursor miRNA

Sequence

gcugguggagaauuuuugguguuguugugaAGUGGAGAGAGUUUUAUCUCAUCaucuuggccuagcuuagggUGAGAUUCAACUCCUCCAACUGCaugcaauaucaguagucagcuauuuauaga
((((.......(((.((((((((((.(((.(((((((.(((((..((((((((..((.(((...))).))))))))))..))))))))).))).))))))))))))).)))))))..........

Structure

----------    guggaga   u          u   a   -    A     UU        au  u   c 
          gcug       auu uugguguugu gug AGU GGAG GAGUU  AUCUCAUC  cu ggc  
          ||||       ||| |||||||||| ||| ||| |||| |||||  ||||||||  || ||| u
          cgac       uga gacuauaacg uaC UCA CCUC CUCAA  UAGAGUgg  ga ucg  
agauauuuau    -------   u          -   G   A    -     CU        --  u   a 

Annotation confidence Not enough data

Genome context

CM018525.1: 41615516-41615580 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rph-mir-1175

Mature rph-miR-1175-5p

• Accession: MIMAT0065003
• Description: Ruditapes philippinarum rph-miR-1175-5p mature miRNA
• Sequence: 31 - AGUGGAGAGAGUUUUAUCUCAUC - 53
• Evidence: not_experimental

Mature rph-miR-1175-3p

• Accession: MIMAT0065002
• Description: Ruditapes philippinarum rph-miR-1175-3p mature miRNA
• Sequence: 73 - UGAGAUUCAACUCCUCCAACUGC - 95
• Evidence: not_experimental

References