Accession
MI0042886
Description
Ruditapes philippinarum
rph-mir-87c precursor miRNA
Sequence
gaggagaaguugcaaugagguuguguggauGCGCUUGAAUCUUUAGCUCAGACcuugguuuuguaagagGUGAGCAAAGUUUCAAGUGUGUcuguaugccuuaaaacaucagauuggcgga
.....((.(((....((((((.(((((((((((((((((.((((.(((((...((((......))))...))))))))).))))))))))))))))))))))).))).))...........
.....((.(((....((((((.(((((((((((((((((.((((.(((((...((((......))))...))))))))).))))))))))))))))))))))).))).))...........
Structure
------gagga a gcaa u U A GAC gu
ga guu ugaggu guguggauGCGCUUGAA CUUU GCUCA cuug u
|| ||| |||||| ||||||||||||||||| |||| ||||| ||||
cu caa auuccg uaugucUGUGUGAACUU GAAA CGAGU gaau u
aggcgguuaga a ---a - U - Gga gu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
CM018532.1: 24177000-24177060 []
Clustered miRNAs
2 other miRNAs are < 10 kb from rph-mir-87c
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature rph-miR-87c-5p
| Accession | MIMAT0065062 |
| Description | Ruditapes philippinarum rph-miR-87c-5p mature miRNA |
| Sequence | 31 - GCGCUUGAAUCUUUAGCUCAGAC - 53 |
| Evidence | not_experimental |
Mature rph-miR-87c-3p
| Accession | MIMAT0065061 |
| Description | Ruditapes philippinarum rph-miR-87c-3p mature miRNA |
| Sequence | 70 - GUGAGCAAAGUUUCAAGUGUGU - 91 |
| Evidence | not_experimental |
References
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