Stem-loop rph-mir-34

Accession

MI0042893

Description

Ruditapes philippinarum rph-mir-34 precursor miRNA

Sequence

aaggugauugguuucuauggcgauguuuuaUGGCAGUGUGGUUAGCUGGUUGUcaagggagcuguacAACCACUUUCUGCACUCCAGAAaaacgugucauuauuucggcaauucugcga
...(((((((.(....(((((.(((((((.(((.(((((((..((.(((((((..((....))..)))))))))..))))))))))..))))))))))))......).)))))..))..

Structure

aag  --     g --uucu     g       -a   C       UU  C       ca  g 
   gu  gauug u      auggc auguuuu  UGG AGUGUGG  AG UGGUUGU  ag g
   ||  ||||| |      ||||| |||||||  ||| |||||||  || |||||||  ||  
   cg  uuaac g      uacug ugcaaaA  ACC UCACGUC  UC ACCAAca  uc a
-ag  uc     g cuuuau     -       AG   -       UU  -       ug  g 

Annotation confidence Not enough data

Genome context

CM018531.1: 6737344-6737402 []

Clustered miRNAs

2 other miRNAs are < 10 kb from rph-mir-34

Mature rph-miR-34-5p

• Accession: MIMAT0065075
• Description: Ruditapes philippinarum rph-miR-34-5p mature miRNA
• Sequence: 31 - UGGCAGUGUGGUUAGCUGGUUGU - 53
• Evidence: not_experimental

Mature rph-miR-34-3p

• Accession: MIMAT0065076
• Description: Ruditapes philippinarum rph-miR-34-3p mature miRNA
• Sequence: 68 - AACCACUUUCUGCACUCCAGAA - 89
• Evidence: not_experimental

References