Stem-loop rph-mir-2d

Accession

MI0042917

Description

Ruditapes philippinarum rph-mir-2d precursor miRNA

Sequence

guuuagaaugaauucuuguuugugacgguaCUGUCAAAGUGGUUGUGAUAUGugauuauuuauucaGAUCACAGCCUGCUUUGAUAUUCucaccaugaacauuccuucaauuuaugcuu
((.((((.((((....((((((((..((...((((((((((((((((((...(((........))).))))))))).)))))))))...))..))))))))....)))).)))).))..

Structure

--  u    a    uucu        ac  uaC         -         AUG   uua 
  gu uaga ugaa    uguuugug  gg   UGUCAAAGU GGUUGUGAU   uga   u
  || |||| ||||    ||||||||  ||   ||||||||| |||||||||   |||    
  cg auuu acuu    acaaguac  cu   AUAGUUUCG CCGACACUA   acu   u
uu  u    a    ccuu        ca  CUU         U         --G   uau 

Annotation confidence Not enough data

Genome context

QUSP01002410.1: 64738-64796 []

Clustered miRNAs

4 other miRNAs are < 10 kb from rph-mir-2d

Mature rph-miR-2d-5p

• Accession: MIMAT0065122
• Description: Ruditapes philippinarum rph-miR-2d-5p mature miRNA
• Sequence: 31 - CUGUCAAAGUGGUUGUGAUAUG - 52
• Evidence: not_experimental

Mature rph-miR-2d-3p

• Accession: MIMAT0065121
• Description: Ruditapes philippinarum rph-miR-2d-3p mature miRNA
• Sequence: 67 - GAUCACAGCCUGCUUUGAUAUUC - 89
• Evidence: not_experimental

References