Stem-loop rph-mir-1

Accession

MI0042922

Description

Ruditapes philippinarum rph-mir-1 precursor miRNA

Sequence

agggaaauuacaagaagacagcuccagugcCCAUACUUCCUUGCUAUCCCAUAgauuuguuuucaaauuuuaguuaUGGAAUGUAAAGAAGUAUGAGUucuguuucuguguaacaucagugaccaucg
.((...(((......(.((((...(((.((.((((((((.((((.((.(((((((((((....)))))).....))))).)))))).)))))))).)).)))...)))).)......)))..))....

Structure

---a  gaa   acaaga g    cuc   u  C        C    U  C     -----      u 
    gg   auu      a acag   cag gc CAUACUUC UUGC AU CCAUA     gauuug u
    ||   |||      | ||||   ||| || |||||||| |||| || |||||     ||||||  
    cc   uga      u uguc   guc UG GUAUGAAG AAUG UA GGUau     uuaaac u
gcua  -ag   cuacaa g    uuu   u  A        A    -  A     ugauu      u 

Annotation confidence Not enough data

Genome context

CM018526.1: 16504069-16504136 []

Mature rph-miR-1-5p

• Accession: MIMAT0065131
• Description: Ruditapes philippinarum rph-miR-1-5p mature miRNA
• Sequence: 31 - CCAUACUUCCUUGCUAUCCCAUA - 53
• Evidence: not_experimental

Mature rph-miR-1-3p

• Accession: MIMAT0065130
• Description: Ruditapes philippinarum rph-miR-1-3p mature miRNA
• Sequence: 77 - UGGAAUGUAAAGAAGUAUGAGU - 98
• Evidence: not_experimental

References