Stem-loop rph-bantam-b

Accession

MI0042924

Description

Ruditapes philippinarum rph-bantam-b precursor miRNA

Sequence

guuaauguuaaugacugaucuuauacuagcCUGGUUUUCGUAUUGGUCUGACAGAuauaaaauacuucUGAGAUCAUUGCGAAAACUGAUUugguucccaauaugacagcagaacaagacu
(((..((((..((.(((.((.(((...(((((((((((((((.((((((..((((...........)))))))))).)))))))))))....))))....))).))))))).)))).))).

Structure

-   aa    aa  a   a  u   -acu    ----           U      GA    uaua 
 guu  uguu  ug cug uc uau    agcC    UGGUUUUCGUA UGGUCU  CAGA    a
 |||  ||||  || ||| || |||    ||||    ||||||||||| ||||||  ||||    a
 cag  acaa  ac gac ag aua    uugg    GUCAAAAGCGU ACUAGA  GUcu    a
u   -a    -g  -   -  u   accc    uUUA           U      --    ucau 

Annotation confidence Not enough data

Genome context

CM018540.1: 15041340-15041400 []

Clustered miRNAs

1 other miRNA is < 10 kb from rph-bantam-b

Mature rph-bantam-b-5p

• Accession: MIMAT0065135
• Description: Ruditapes philippinarum rph-bantam-b-5p mature miRNA
• Sequence: 31 - CUGGUUUUCGUAUUGGUCUGACAGA - 55
• Evidence: not_experimental

Mature rph-bantam-b-3p

• Accession: MIMAT0065134
• Description: Ruditapes philippinarum rph-bantam-b-3p mature miRNA
• Sequence: 69 - UGAGAUCAUUGCGAAAACUGAUU - 91
• Evidence: not_experimental

References