Accession
MI0042925
Description
Ruditapes philippinarum
rph-bantam-a precursor miRNA
Sequence
aggauuauuuuguuuucaugccugacgauuCCGGUUUUCAUUCUGGUCUGACAGGuuuauauauuaucUGAGAUCAUUUUGAAAACUGAUAuugucacaugacuugacagcgcuuguggag
...............(((((..(((((((..(((((((((...((((((..(((((.........)))))))))))...)))))))))..))))))))))))(((.(((.....))).)))
...............(((((..(((((((..(((((((((...((((((..(((((.........)))))))))))...)))))))))..))))))))))))(((.(((.....))).)))
Structure
----aggauuauuuuguuu cc uC UUC GA uua
ucaug ugacgau CGGUUUUCA UGGUCU CAGGu u
||||| ||||||| ||||||||| |||||| ||||| a
aguac acuguuA GUCAAAAGU ACUAGA GUcua u
gagguguucgcgacaguuc -- UA UUU -- uua
Annotation confidence
Not enough data
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Genome context
CM018540.1: 15041974-15042034 []
Clustered miRNAs
1 other miRNA is < 10 kb from rph-bantam-a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature rph-bantam-a-5p
| Accession | MIMAT0065137 |
| Description | Ruditapes philippinarum rph-bantam-a-5p mature miRNA |
| Sequence | 31 - CCGGUUUUCAUUCUGGUCUGACAGG - 55 |
| Evidence | not_experimental |
Mature rph-bantam-a-3p
| Accession | MIMAT0065136 |
| Description | Ruditapes philippinarum rph-bantam-a-3p mature miRNA |
| Sequence | 69 - UGAGAUCAUUUUGAAAACUGAUA - 91 |
| Evidence | not_experimental |
References
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