Stem-loop bla-mir-1

Accession

MI0046420

Description

Branchiostoma lanceolatum bla-mir-1 precursor miRNA

Sequence

gaaaaucaggcacccaggccuguuaagcauAAGUACUUCUUUACUAUCCCAUAcugaacucaauuguaUGGAAUGUAAAGAAGUAUGUAUgguuagcaggcuaccacgucaucuggucau
....((((((.((...((((((((((.((((.((((((((((((.((.((((((...........)))))).)))))))))))))).)))).)))))))))).....))..))))))...

Structure

gaaa      -c  --cca          g    A            U  C      ugaa 
    aucagg  ac     ggccuguuaa cauA GUACUUCUUUAC AU CCAUAc    c
    ||||||  ||     |||||||||| |||| |||||||||||| || ||||||    u
    uggucu  ug     ucggacgauu gUAU UAUGAAGAAAUG UA GGUaug    c
-uac      ac  cacca          g    G            -  A      uuaa 

Annotation confidence Not enough data

Genome context

Sc0000092: 697292-697351 []

Clustered miRNAs

1 other miRNA is < 10 kb from bla-mir-1

Mature bla-miR-1-5p

• Accession: MIMAT0071351
• Description: Branchiostoma lanceolatum bla-miR-1-5p mature miRNA
• Sequence: 31 - AAGUACUUCUUUACUAUCCCAUA - 53
• Evidence: not_experimental

Mature bla-miR-1-3p

• Accession: MIMAT0071350
• Description: Branchiostoma lanceolatum bla-miR-1-3p mature miRNA
• Sequence: 69 - UGGAAUGUAAAGAAGUAUGUAU - 90
• Evidence: not_experimental

References