Stem-loop ete-mir-200c

Accession

MI0047879

Description

Echinops telfairi ete-mir-200c precursor miRNA

Sequence

cuggaggugggcaggcugggugggggcccuCGUCUUACCCAGCAGUGUUUGGgugcugguugggagucucUAAUACUGCCGGGUAAUGAUGGAggccccuguucugugucagcggcagccaug
.(((..((..((.(((((((.(((((((.(((((((((((.((((((((.(((.(((.......)))))).)))))))).)))))).))))).)))))))..)))).))).)).))..)))..

Structure

-c   ag  gg  a   -    -u       c     -      A        U   u   gg 
  ugg  gu  gc ggc uggg  gggggcc uCGUC UUACCC GCAGUGUU GGg gcu  u
  |||  ||  || ||| ||||  ||||||| ||||| |||||| |||||||| ||| |||  u
  acc  cg  cg cug gucu  uccccgg GGUAG AAUGGG CGUCAUAA cuc uga  g
gu   ga  -g  a   u    ug       A     U      C        U   -   gg 

Annotation confidence Not enough data

Genome context

ref|NW_004558731.1|: 28885318-28885440 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ete-mir-200c

Mature ete-miR-200c-5p

• Accession: MIMAT0074085
• Description: Echinops telfairi ete-miR-200c-5p mature miRNA
• Sequence: 31 - CGUCUUACCCAGCAGUGUUUGG - 52
• Evidence: not_experimental

Mature ete-miR-200c-3p

• Accession: MIMAT0074084
• Description: Echinops telfairi ete-miR-200c-3p mature miRNA
• Sequence: 71 - UAAUACUGCCGGGUAAUGAUGGA - 93
• Evidence: not_experimental

References