Stem-loop pma-mir-1e

Accession

MI0048240

Description

Petromyzon marinus pma-mir-1e precursor miRNA

Sequence

ccuccgccacguggugauucggcugaggcaAUGUGCCUCUUUACGUCCCCAUAcgcagcucugagucuaUGGAAUGUAAAGAAGUACGUUGcuucggcggagcugagcgacccggcccgac
.....(((..((.((..(((.(((((((((((((((.(((((((((..(((((.((........)).))))).))))))))).))))))))))))))).)))....)).))..))).....

Structure

ccucc   ac  g  --ga   g               C         CC     c  agc 
     gcc  gu gu    uuc gcugaggcaAUGUGC UCUUUACGU  CCAUA gc   u
     |||  || ||    ||| ||||||||||||||| |||||||||  ||||| ||    
     cgg  ca cg    gag cggcuucGUUGCAUG AGAAAUGUA  GGUau ug   c
cagcc   cc  g  aguc   g               A         -A     c  agu 

Annotation confidence Not enough data

Genome context

ref|NC_046083.1|: 5668417-5668537 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pma-mir-1e

Mature pma-miR-1e-5p

• Accession: MIMAT0074753
• Description: Petromyzon marinus pma-miR-1e-5p mature miRNA
• Sequence: 31 - AUGUGCCUCUUUACGUCCCCAUA - 53
• Evidence: not_experimental

Mature pma-miR-1e-3p

• Accession: MIMAT0074752
• Description: Petromyzon marinus pma-miR-1e-3p mature miRNA
• Sequence: 70 - UGGAAUGUAAAGAAGUACGUUG - 91
• Evidence: not_experimental

References