Stem-loop dpu-mir-998

Accession

MI0049017

Description

Daphnia pulex dpu-mir-998 precursor miRNA

Sequence

uguuuguguguguguacacagccccccaguGCUGAGUCUAGUGGAUGAUGUGCuagacauuuuagcuugaauucuugguugcAUAGCACCACGGGAUUCAGCCGCuggugugucgugguuuuauauuuuauucau
((..((.(((((....(((.((.(.((((((((((((((.((((.((.(((((.(((.((((......))))))).....))))).)))))).)))))))).)))))).).)).)))....)))))..))..)).

Structure

-  uu  -u     ugua   a  c c      -        A    A  A     ----u   c    ua 
 ug  ug  gugug    cac gc c ccaguG CUGAGUCU GUGG UG UGUGC     aga auuu  g
 ||  ||  |||||    ||| || | |||||| |||||||| |||| || |||||     ||| ||||   
 ac  au  uauau    gug ug g gguCGC GACUUAGG CACC AC AUAcg     ucu uaag  c
u  uu  uu     uuug   c  u u      C        G    -  G     uuggu   -    uu 

Annotation confidence Not enough data

Genome context

DAPPUscaffold_32: 69280-69354 []

Clustered miRNAs

4 other miRNAs are < 10 kb from dpu-mir-998

Mature dpu-miR-998-5p

• Accession: MIMAT0076063
• Description: Daphnia pulex dpu-miR-998-5p mature miRNA
• Sequence: 31 - GCUGAGUCUAGUGGAUGAUGUGC - 53
• Evidence: not_experimental

Mature dpu-miR-998-3p

• Accession: MIMAT0076062
• Description: Daphnia pulex dpu-miR-998-3p mature miRNA
• Sequence: 83 - AUAGCACCACGGGAUUCAGCCGC - 105
• Evidence: not_experimental

References