Stem-loop dpu-let-7

Accession

MI0049026

Description

Daphnia pulex dpu-let-7 precursor miRNA

Sequence

auuauuaugccaagaauggaucuugcggguUGAGGUAGUAGGUUGUAUGGUUcgguauuacacagccgcguugccggauagacucucgaaaaauauggaaaucaaccggacgaaaucaaaaucuuuuugguuuuccguucgguuccguuuuuuggacagaggacaaauggcgcgcgccccgguggaaCUGUACAACUUGCUAACUUUCCucgcgggacucuucaucuucuccuuuuuuu
...........((((..((((((((((((..(((.((((((((((((((((((.....(((...(.(((((.((((......(((((.(((((.(((((.....(((((((((((((((((...)))))))))..)))))))))))))))))).))..)))......))))))))).)...))))))))))))))))))))).)))..))))))))).)))...))))...........

Structure

auuauuaugcc    -au   -         uU   G                  gguau   aca c     u    gauaga   --  g     u     aauca        --         u 
           aaga   gga ucuugcggg  GAG UAGUAGGUUGUAUGGUUc     uac   g cgcgu gccg      cuc  uc aaaaa augga     accggacg  aaaucaaaa  
           ||||   ||| |||||||||  ||| ||||||||||||||||||     |||   | ||||| ||||      |||  || ||||| |||||     ||||||||  ||||||||| c
           uucu   ucu agggcgcuC  UUC AUCGUUCAACAUGUCaag     gug   c gcgcg cggu      gag  ag uuuuu ugccu     uggcuugc  uuugguuuu  
uuuuuuuccuc    acu   c         CU   A                  -----   gcc c     -    aaacag   ac  g     -     -----        cu         u 

Annotation confidence Not enough data

Genome context

DAPPUscaffold_71: 446343-446521 []

Clustered miRNAs

1 other miRNA is < 10 kb from dpu-let-7

Mature dpu-let-7-5p

• Accession: MIMAT0076080
• Description: Daphnia pulex dpu-let-7-5p mature miRNA
• Sequence: 31 - UGAGGUAGUAGGUUGUAUGGUU - 52
• Evidence: not_experimental

Mature dpu-let-7-3p

• Accession: MIMAT0076081
• Description: Daphnia pulex dpu-let-7-3p mature miRNA
• Sequence: 188 - CUGUACAACUUGCUAACUUUCC - 209
• Evidence: not_experimental

References