Stem-loop osa-MIR171i

Accession

MI0001155

Description

Oryza sativa osa-MIR171i precursor miRNA

Gene family

MIPF0000030; MIR171_1

Literature search

42 open access papers mention osa-MIR171i
(147 sentences)

Sequence

126 reads, 92 reads per million, 2 experiments

uaaaaagAGGUAUUGGCGUGCCUCAAUCcgaaggcauggcugauuacaggcaccucgaccgaucuagcgcaugcagccauguuucuuGGAUUGAGCCGCGUCAAUAUCucuccuugcuuc
.....(((((((((((((((.(((((((((((((((((((((....((.((..((.((....)).)).)).))))))))))))).)))))))))).))))))))))))))).........

Structure

----uaaaa               C          -           auua  g  ac  c  c 
         agAGGUAUUGGCGUG CUCAAUCcga aggcauggcug    ca gc  cu ga c
         ||||||||||||||| |||||||||| |||||||||||    || ||  || ||  
         ucuCUAUAACUGCGC GAGUUAGGuu uuuguaccgac    gu cg  ga cu g
cuucguucc               C          c           ----  a  -c  u  a 

Annotation confidence High

Genome context

Chr3: 21191603-21191722 [+]

Mature osa-miR171i-3p

• Accession: MIMAT0001085
• Description: Oryza sativa osa-miR171i-3p mature miRNA
• Sequence: 88 - GGAUUGAGCCGCGUCAAUAUC - 108
• Evidence: not_experimental

Mature osa-miR171i-5p

• Accession: MIMAT0022886
• Description: Oryza sativa osa-miR171i-5p mature miRNA
• Sequence: 8 - AGGUAUUGGCGUGCCUCAAUC - 28
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 15685364
   Computational identification of novel family members of microRNA genes in Arabidopsis thaliana and Oryza sativa
   "Li Y, Li W, Jin YX"
   "Acta Biochim Biophys Sin (Shanghai) (2005) 37:75-87


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176